Package: PCBS 0.1.1
PCBS: Principal Component BiSulfite
A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principal Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.
Authors:
PCBS_0.1.1.tar.gz
PCBS_0.1.1.zip(r-4.5)PCBS_0.1.1.zip(r-4.4)PCBS_0.1.1.zip(r-4.3)
PCBS_0.1.1.tgz(r-4.5-any)PCBS_0.1.1.tgz(r-4.4-any)PCBS_0.1.1.tgz(r-4.3-any)
PCBS_0.1.1.tar.gz(r-4.5-noble)PCBS_0.1.1.tar.gz(r-4.4-noble)
PCBS_0.1.1.tgz(r-4.4-emscripten)PCBS_0.1.1.tgz(r-4.3-emscripten)
PCBS.pdf |PCBS.html✨
PCBS/json (API)
| # Install 'PCBS' in R: |
| install.packages('PCBS', repos = c('https://katlande.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/katlande/pcbs/issues
- eigen - Simulated WGBS data for PCBS vignettes
Last updated 7 months agofrom:c26e14189d. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Apr 02 2025 |
| R-4.5-win | OK | Apr 02 2025 |
| R-4.5-mac | OK | Apr 02 2025 |
| R-4.5-linux | OK | Apr 02 2025 |
| R-4.4-win | OK | Apr 02 2025 |
| R-4.4-mac | OK | Apr 02 2025 |
| R-4.4-linux | OK | Apr 02 2025 |
| R-4.3-win | OK | Apr 02 2025 |
| R-4.3-mac | OK | Apr 02 2025 |
Exports:addRanksCheckOvercompressioncheckRankchromDictchromDictMethDefineBestPCget_all_DMRsGet_Novel_DMRsgetPCRanksgetRegionScoreslinlmIntxMethyDiff_SetMethylDiffmethylDiff_metagenemultiple_metagenesOl_ReliableoneSeedplot_metagenerankDistscore_metagenesetilttrimDMR
Dependencies:clicolorspacedata.tabledplyrfansifarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbletidyselectutf8vctrsviridisLitewithr
